Eukaryotic Cell Definitions: = Typically Found Only In Plant Cells = Typically Found In Animal Cells

• Golgi Apparatus: A series (stack) of flattened, membrane-bound sacs (saccules) involved in the storage, modification and secretion of proteins (glycoproteins) and lipids destined to leave the cell (extracellular) and for use within the cell (intracellular). The Golgi apparatus is abundant in secretory cells, such as cells of the pancreas.

• Golgi Vesicle: A membrane-bound body that forms by "budding" from the Golgi apparatus. It contains proteins (glycoproteins), such as digestive enzymes, and migrates to the cell (plasma) membrane. Golgi vesicles fuse with the cell membrane and discharge their contents into the exterior of the cell through a process called exocytosis. Some Golgi vesicles become lysosomes which are involved in intracellular digestion.

• Pinocytotic Vesicle: A membrane-bound vacuole formed by a specific type of endocytosis called pinocytosis. The plasma membrane invaginates (pinches inwardly) to form a vesicle that detaches and moves into the cytoplasm. Macromolecular droplets and particles up to 2 micrometers in diameter enter the cell within these pinocytotic vesicles. Larger particles (including bacteria) enter special white blood cells (phagocytes) through a form of endocytosis called phagocytosis. The Amoeba is a unicellular protist that ingests food (including algal cells) by phagocytosis.

• Lysosome: A membrane-bound organelle containing hydrolytic (digestive) enzymes. Lysosomes originate as membrane-bound vesicles (called Golgi vesicles) that bud from the Golgi apparatus. They are primarily involved with intracellular digestion. Lysosomes fuse with vesicles (small vacuoles) formed by endocytosis. The contents of these vesicles are digested by lysosomal enzymes. Autodigestion by lysosomes also occurs during embryonic development. The fingers of a human embryo are webbed initially, but are separated from each other by lysosomal enzymes. Cells in the tail of a tadpole are digested by lysosomal enzymes during the gradual transition into a frog.
• Peroxisome: A membrane-bound organelle that contains specific enzymes imported from the cytoplasm (cytosol). For example, certain peroxisomes contain the enzyme catalase which rapidly breaks down toxic hydrogen peroxide into water and oxygen. This reaction can be easily demonstrated by pouring some hydrogen peroxide on raw meat or an open wound.
• Glycolysis: An anaerobic oxidation pathway outside of the mitochondria in which glucose is oxidized to pyruvate with a net gain of 2 ATP molecules. Pyruvate is converted into a 2-carbon acetyl group which enters the Krebs cycle within the mitochondria.

• Mitochondrion: Membrane-bound organelle and the site of aerobic respiration and ATP production. Energy from the step-by-step oxidation of glucose (called the Krebs or citric acid cycle) is used to produce molecules of adenosine triphosphate (ATP). The Krebs cycle starts when a 2-carbon acetyl group combines with a 4-carbon group to form a 6-carbon citrate. Including glycolysis (which occurs outside the mitochondria), a total of 38 ATP molecules are generated from one molecule of glucose.

In eukaryotic cells, including the cells of your body, ATP is produced within special membrane-bound organelles called mitochondria. During this process, electrons are shuttled through an iron-containing cytochrome enzyme system along membranes of the cristae which result in the phosphorylation of ADP (adenosine diphosphate) to form ATP (adenosine triphosphate). ATP is the vital energy molecule of all living systems which is absolutely necessary for key biochemical reactions within the cells. The actual synthesis of ATP from the coupling of ADP (adenosine diphosphate) with phosphate (PO₄) is very complicated and involves a mechanism called chemiosmosis. The electron flow generates a higher concentration (charge) of positively-charged hydrogen (H+) ions (or protons) on one side of the membrane. When one side of the membrane is sufficiently "charged," these protons recross the membrane through special channels (pores) containing the enzyme ATP synthetase, as molecules of ATP are produced. In the membranes of prokaryotic bacterial cells, ATP is produced by a similar process. In fact, some biologists believe that mitochondria and chloroplasts within eukaryotic animal and plant cells may have originated from ancient symbiotic bacteria that were once captured by other cells in the distant geologic past. This fascinating idea is called the "Endosymbiont Theory" (or "Endosymbiont Hypothesis" for those who are more skeptical). Chloroplasts and mitochondria have outer phospholipid bilayer membranes and circular DNA molecules like those of prokaryotic bacterial cells. In addition, the layers of thylakoid membranes in the grana of chloroplasts are remarkably similar to photosynthetic cells of cyanobacteria. Acquiring cells and genomes from other organisms is known as symbiogenesis. According to L. Margulis and D. Sagan (Acquiring Genomes: A Theory of the Origins of Species 2002), symbiogenesis is a major factor in the evolution of life of earth. In fact, the author's state that long-term genomic mergers result in much greater evolutionary change than DNA mutations and natural selection.

The Parts of a Typical Microscope

The Parts of a Typical Microscope

'Microscopes"

"Microscopes" can largely be separated into three classes: optical theory microscopes (Light microscope), electron microscopes (e.g.,TEM), and scanning probe microscopes (SPM).

Optical theory microscopes are microscopes which function through the optical theory of lenses in order to magnify the image generated by the passage of a wave through the sample. The waves used are either electromagnetic (in optical microscopes) or electron beams (in electron microscopes). The types are the Compound Light, Stereo, and the electron microscope.

Optical microscopes

Main article: Optical microscope

Optical microscopes, through their use of visible wavelengths of light, are the simplest and hence most widely used type of microscope.

Optical microscopes typically use refractive lenses of glass and occasionally of plastic or quartz, to focus light into the eye or another light detector. Mirror-based optical microscopes operate in the same manner. Typical magnification of a light microscope, assuming visible range light, is up to 1500x with a theoretical resolution limit of around 0.2 micrometres or 200 nanometers. Specialized techniques (e.g., scanning confocal microscopy) may exceed this magnification but the resolution is diffraction limited. Using shorter wavelengths of light, such as the ultraviolet, is one way to improve the spatial resolution of the microscope as are techniques such as Near-field scanning optical microscope.

A stereo microscope is often used for lower-power magnification on large subjects.

Various wavelengths of light, including those beyond the visible range, are sometimes used for special purposes. Ultraviolet light is used to enable the resolution of smaller features as well as to image samples that are transparent to the eye. Near infrared light is used to image circuitry embedded in bonded silicon devices as silicon is transparent in this region. Many wavelengths of light, ranging from the ultraviolet to the visible are used to excite fluorescence emission from objects for viewing by eye or with sensitive cameras.

• phase contrast microscope:Phase contrast microscopy is an optical microscopy illumination technique in which small phase shifts in the light passing through a transparent specimen are converted into amplitude or contrast changes in the image.

A phase contrast microscope does not require staining to view the slide. This microscope made it possible to study the cell cycle.

Electron Microscope

Three major variants of electron microscopes exist:

• Scanning electron microscope (SEM): looks at the surface of bulk objects by scanning the surface with a fine electron beam and measuring reflection. May also be used for spectroscopy.
• Transmission electron microscope (TEM): passes electrons completely through the sample, analogous to basic optical microscopy. This requires careful sample preparation, since electrons are scattered so strongly by most materials.This is a scientific device that allows people to see objects that could normally not be seen by the naked or unaided eye.
• Scanning Tunneling Microscope (STM): is a powerful technique for viewing surfaces at the atomic level.

The SEM, TEM, STM are include in the scanning probe microsocpy.

Flagella

Salmonella enterica. TEM about 10,000X. Salmonella is an enteric bacterium related to E. coli. The enterics are motile by means of peritrichous flagella.

Flagella

Flagella are filamentous protein structures attached to the cell surface that provide the swimming movement for most motile procaryotes. Procaryotic flagella are much thinner than eucaryotic flagella, and they lack the typical "9 + 2" arrangement of microtubules. The diameter of a procaryotic flagellum is about 20 nanometers, well-below the resolving power of the light microscope. The flagellar filament is rotated by a motor apparatus in the plasma membrane allowing the cell to swim in fluid environments. Bacterial flagella are powered by proton motive force (chemiosmotic potential) established on the bacterial membrane, rather than ATP hydrolysis which powers eucaryotic flagella. About half of the bacilli and all of the spiral and curved bacteria are motile by means of flagella. Very few cocci are motile, which reflects their adaptation to dry environments and their lack of hydrodynamic design.

The ultrastructure of the flagellum of E. coli is illustrated in Figure 3 below (after Dr. Julius Adler of the University of Wisconsin). About 50 genes are required for flagellar synthesis and function. The flagellar apparatus consists of several distinct proteins: a system of rings embedded in the cell envelope (the basal body), a hook-like structure near the cell surface, and the flagellar filament. The innermost rings, the M and S rings, located in the plasma membrane, comprise the motor apparatus. The outermost rings, the P and L rings, located in the periplasm and the outer membrane respectively, function as bushings to support the rod where it is joined to the hook of the filament on the cell surface. As the M ring turns, powered by an influx of protons, the rotary motion is transferred to the filament which turns to propel the bacterium.

Figure 3. The ultrastructure of a bacterial flagellum (after J. Adler). Measurements are in nanometers. The flagellum of E. coli consists of three parts, filament, hook and basal body, all composed of different proteins. The basal body and hook anchor the whip-like filament to the cell surface. The basal body consists of four ring-shaped proteins stacked like donuts around a central rod in the cell envelope. The inner rings, associated with the plasma membrane, are the flagellar powerhouse for activating the filament. The outer rings in the peptidoglycan and outer membrane are support rings or "bushings" for the rod. The filament rotates and contracts which propels and steers the cell during movement.

Flagella may be variously distributed over the surface of bacterial cells in distinguishing patterns, but basically flagella are either polar (one or more flagella arising from one or both poles of the cell) or peritrichous (lateral flagella distributed over the entire cell surface). Flagellar distribution is a genetically-distinct trait that is occasionally used to characterize or distinguish bacteria. For example, among Gram-negative rods, Pseudomonas has polar flagella to distinguish them from enteric bacteria, which have peritrichous flagella.

Figure 4. Different arrangements of bacterial flagella. Swimming motility, powered by flagella, occurs in half the bacilli and most of the spirilla. Flagellar arrangements, which can be determined by staining and microscopic observation, may be a clue to the identity of a bacterium. See Figure 6 below.

Flagella were proven to be organelles of bacterial motility by shearing them off (by mixing cells in a blender) and observing that the cells could no longer swim although they remained viable. As the flagella were re-grown and reached a critical length, swimming movement was restored to the cells. The flagellar filament grows at its tip (by the deposition of new protein subunits) not at its base (like a hair).

Procaryotes are known to exhibit a variety of types of tactic behavior, i.e., the ability to move (swim) in response to environmental stimuli. For example, during chemotaxis a bacterium can sense the quality and quantity of certain chemicals in its environment and swim towards them (if they are useful nutrients) or away from them (if they are harmful substances). Other types of tactic response in procaryotes include phototaxis, aerotaxis and magnetotaxis. The occurrence of tactic behavior provides evidence for the ecological (survival) advantage of flagella in bacteria and other procaryotes.

Detecting Bacterial Motility

Since motility is a primary criterion for the diagnosis and identification of bacteria, several techniques have been developed to demonstrate bacterial motility, directly or indirectly.

1. flagellar stains outline flagella and show their pattern of distribution. If a bacterium possesses flagella, it is presumed to be motile.

Figure 5. Flagellar stains of three bacteria a. Bacillus cereus b. Vibrio cholerae c. Bacillus brevis. (CDC). Since the bacterial flagellum is below the resolving power of the light microscope, although bacteria can be seen swimming in a microscope field, the organelles of movement cannot be detected. Staining techniques such as Leifson's method utilize dyes and other components that precipitate along the protein filament and hence increase its effective diameter. Flagellar distribution is occasionally used to differentiate between morphologically related bacteria. For example, among the Gram-negative motile rod-shaped bacteria, the enterics have peritrichous flagella while the pseudomonads have polar flagella.

2. motility test medium demonstrates if cells can swim in a semisolid medium. A semisolid medium is inoculated with the bacteria in a straight-line stab with a needle. After incubation, if turbidity (cloudiness) due to bacterial growth can be observed away from the line of the stab, it is evidence that the bacteria were able to swim through the medium.

Julius Adler exploited this observation during his studies of chemotaxis in E. coli. He prepared a gradient of glucose by allowing the sugar to diffuse into a semisolid medium from a central point in the medium. This established a concentration gradient of glucose along the radius of diffusion. When E. coli cells were seeded in the medium at the lowest concentration of glucose (along the edge of the circle), they swam up the gradient towards a higher concentration (the center of the circle), exhibiting their chemotactic response to swim towards a useful nutrient. Later, Adler developed a tracking microscope that could record and film the track that E. coli takes as it swims towards a chemotactic attractant or away from a chemotactic repellent. This led to an understanding of the mechanisms of bacterial chemotaxis, first at a structural level, then at a biomolecular level.

Figure 6. Bacterial cultures grown in motility test medium. The tube on left is a non motile organism; the tube on right is a motile organism. Motility test medium is a semi-soft medium that is inoculated with a straight needle. If the bacteria are motile, they will swim away from the line of inoculation in order to find nutrients, causing turbidity or cloudiness throughout the medium. If they are non motile, they will only grow along the line of inoculation. www.jlindquist.net/ generalmicro/dfmotility.html.

3. direct microscopic observation of living bacteria in a wet mount. One must look for transient movement of swimming bacteria. Most unicellular bacteria, because of their small size, will shake back and forth in a wet mount observed at 400X or 1000X. This is Brownian movement, due to random collisions between water molecules and bacterial cells. True motility is confirmed by observing the bacterium swim from one side of the microscope field to the other side.

Wet mount of the bacterium Rhodospirillum rubrum, about 1500X mag. Click here or on the image for a short video from the Department of Microbiology and Immunology, University of Leicester, that illustrates swimming motility of this photosynthetic purple bacterium.

Figure 7. A Desulfovibrio species. TEM. About 15,000X. The bacterium is motile by means of a single polar flagellum. Of course, one can determine the presence of flagella by means of electron microscopy. Perhaps this is an alternative way to determine bacterial motility, if you happen to have an electron microscope.

Primary Structure of Biological Macromolecules Determines Function

Drawing of a typical bacterial cell, by Vaike Haas, University of Wisconsin-Madison Primary Structure of Biological Macromolecules Determines Function Procaryotic structural components consist of macromolecules such as DNA, RNA, proteins, polysaccharides, phospholipids, or some combination thereof. The macromolecules are made up of primary subunits such as nucleotides, amino acids and sugars (Table 1). It is the sequence in which the subunits are put together in the macromolecule, called the primary structure, that determines many of the properties that the macromolecule will have. Thus, the genetic code is determined by specific nuleotide base sequences in chromosomal DNA; the amino acid sequence in a protein determines the properties and function of the protein; and sequence of sugars in bacterial lipopolysaccharides determines unique cell wall properties for pathogens. The primary structure of a macromolecule will drive its function, and differences within the primary structure of biological macromolecules accounts for the immense diversity of life. Table 1. Macromolecules that make up cell material Macromolecule Primary Subunits Where found in cell Proteins amino acids Flagella, pili, cell walls, cytoplasmic membranes, ribosomes, cytoplasm Polysaccharides sugars (carbohydrates) capsules, inclusions (storage), cell walls Phospholipids fatty acids membranes Nucleic Acids (DNA/RNA) nucleotides DNA: nucleoid (chromosome), plasmids rRNA: ribosomes; mRNA, tRNA: cytoplasm Procaryotic Cell Architecture At one time it was thought that bacteria and other procaryotes were essentially "bags of enzymes" with no inherent cellular architecture. The development of the electron microscope in the 1950s revealed the distinct anatomical features of bacteria and confirmed the suspicion that they lacked a nuclear membrane. Procaryotes are cells of relatively simple construction, especially if compared to eucaryotes. Whereas eucaryotic cells have a preponderance of organelles with separate cellular functions, procaryotes carry out all cellular functions as individual units. A procaryotic cell has five essential structural components: a nucleoid (DNA), ribosomes, cell membrane, cell wall, and some sort of surface layer, which may or may not be an inherent part of the wall. Structurally, there are three architectural regions: appendages (attachments to the cell surface) in the form of flagella and pili (or fimbriae); a cell envelope consisting of a capsule, cell wall and plasma membrane; and a cytoplasmic region that contains the cell chromosome (DNA) and ribosomes and various sorts of inclusions (Figure 1). Figure 1. Cutaway drawing of a typical bacterial cell illustrating structural components. See Table 2 below for chemical composition and function of the labeled components. Table 2. Summary of characteristics of typical bacterial cell structures Structure Flagella Function(s) Swimming movement Predominant chemical composition Protein Pili Sex pilus Stabilizes mating bacteria during DNA transfer by conjugation Protein Common pili or fimbriae Attachment to surfaces; protection against phagotrophic engulfment Protein Capsules (includes "slime layers" and glycocalyx) Attachment to surfaces; protection against phagocytic engulfment, occasionally killing or digestion; reserve of nutrients or protection against desiccation Usually polysaccharide; occasionally polypeptide Cell wall Gram-positive bacteria Prevents osmotic lysis of cell protoplast and confers rigidity and shape on cells Peptidoglycan (murein) complexed with teichoic acids Gram-negative bacteria Peptidoglycan prevents osmotic lysis and confers rigidity and shape; outer membrane is permeability barrier; associated LPS and proteins have various functions Peptidoglycan (murein) surrounded by phospholipid protein-lipopolysaccharide "outer membrane" Plasma membrane Permeability barrier; transport of solutes; energy generation; location of numerous enzyme systems Phospholipid and protein Ribosomes Sites of translation (protein synthesis) RNA and protein Inclusions Often reserves of nutrients; additional specialized functions Highly variable; carbohydrate, lipid, protein or inorganic Chromosome Genetic material of cell DNA Plasmid Extrachromosomal genetic material DNA Figure 2 . Electron micrograph of an ultra-thin section of a dividing pair of group A streptococci (20,000X). The cell surface fimbriae (fibrils) are evident. The bacterial cell wall is seen as the light staining region between the fibrils and the dark staining cell interior. Cell division in progress is indicated by the new septum formed between the two cells and by the indentation of the cell wall near the cell equator. The streptococcal cell diameter is equal to approximately one micron. Electron micrograph of Streptococcus pyogenes by Maria Fazio and Vincent A. Fischetti, Ph.D. with permission. The Laboratory of Bacterial Pathogenesis and Immunology, Rockefeller University.

Cell As A Basic Unit Of Life

The one-celled organism amoeba proteus

A single-celled bacteria of the type: E. coli

A human red blood cell

A plant cell from the leaf of a poplar tree

The cell is one of the most basic units of life. There are millions of different types of cells. There are cells that are organisms onto themselves, such as microscopic amoeba and bacteria cells. And there are cells that only function when part of a larger organism, such as the cells that make up your body. The cell is the smallest unit of life in our bodies. In the body, there are brain cells, skin cells, liver cells, stomach cells, and the list goes on. All of these cells have unique functions and features. And all have some recognizable similarities. All cells have a 'skin', called the plasma membrane, protecting it from the outside environment. The cell membrane regulates the movement of water, nutrients and wastes into and out of the cell. Inside of the cell membrane are the working parts of the cell. At the center of the cell is the cell nucleus. The cell nucleus contains the cell's DNA, the genetic code that coordinates protein synthesis. In addition to the nucleus, there are many organelles inside of the cell - small structures that help carry out the day-to-day operations of the cell. One important cellular organelle is the ribosome. Ribosomes participate in protein synthesis. The transcription phase of protein synthesis takes places in the cell nucleus. After this step is complete, the mRNA leaves the nucleus and travels to the cell's ribosomes, where translation occurs. Another important cellular organelle is the mitochondrion. Mitochondria (many mitochondrion) are often referred to as the power plants of the cell because many of the reactions that produce energy take place in mitochondria. Also important in the life of a cell are the lysosomes. Lysosomes are organelles that contain enzymes that aid in the digestion of nutrient molecules and other materials. Below is a labelled diagram of a cell to help you identify some of these structures.

There are many different types of cells. One major difference in cells occurs between plant cells and animal cells. While both plant and animal cells contain the structures discussed above, plant cells have some additional specialized structures. Many animals have skeletons to give their body structure and support. Plants do not have a skeleton for support and yet plants don't just flop over in a big spongy mess. This is because of a unique cellular structure called the cell wall. The cell wall is a rigid structure outside of the cell membrane composed mainly of the polysaccharide cellulose. As pictured at left, the cell wall gives the plant cell a defined shape which helps support individual parts of plants. In addition to the cell wall, plant cells contain an organelle called the chloroplast. The chloroplast allow plants to harvest energy from sunlight. Specialized pigments in the chloroplast (including the common green pigment chlorophyll) absorb sunlight and use this energy to complete the chemical reaction:

6 CO₂ + 6 H₂O + energy (from sunlight) C₆H₁₂O₆ + 6 O₂

In this way, plant cells manufacture glucose and other carbohydrates that they can store for later use.

Organisms contain many different types of cells that perform many different functions. In the next lesson, we will examine how individual cells come together to form larger structures in the human body.

Subcellular components

Subcellular components

The cells of eukaryotes (left) and prokaryotes (right).

All cells, whether prokaryotic or eukaryotic, have a membrane that envelops the cell, separates its interior from its environment, regulates what moves in and out (selectively permeable), and maintains the electric potential of the cell. Inside the membrane, a salty cytoplasm takes up most of the cell volume. All cells possess DNA, the hereditary material of genes, and RNA, containing the information necessary to build various proteins such as enzymes, the cell's primary machinery. There are also other kinds of biomolecules in cells. This article will list these primary components of the cell, then briefly describe their function.

Cell membrane: A cell's defining boundary

Main article: Cell membrane

The cytoplasm of a cell is surrounded by a cell membrane or plasma membrane. The plasma membrane in plants and prokaryotes is usually covered by a cell wall. This membrane serves to separate and protect a cell from its surrounding environment and is made mostly from a double layer of lipids (hydrophobic fat-like molecules) and hydrophilic phosphorus molecules. Hence, the layer is called a phospholipid bilayer. It may also be called a fluid mosaic membrane. Embedded within this membrane is a variety of protein molecules that act as channels and pumps that move different molecules into and out of the cell. The membrane is said to be 'semi-permeable', in that it can either let a substance (molecule or ion) pass through freely, pass through to a limited extent or not pass through at all. Cell surface membranes also contain receptor proteins that allow cells to detect external signaling molecules such as hormones.

Cytoskeleton: A cell's scaffold

Main article: Cytoskeleton

The cytoskeleton acts to organize and maintain the cell's shape; anchors organelles in place; helps during endocytosis, the uptake of external materials by a cell, and cytokinesis, the separation of daughter cells after cell division; and moves parts of the cell in processes of growth and mobility. The eukaryotic cytoskeleton is composed of microfilaments, intermediate filaments and microtubules. There is a great number of proteins associated with them, each controlling a cell's structure by directing, bundling, and aligning filaments. The prokaryotic cytoskeleton is less well-studied but is involved in the maintenance of cell shape, polarity and cytokinesis.^[7]

Genetic material

Two different kinds of genetic material exist: deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). Most organisms use DNA for their long-term information storage, but some viruses (e.g., retroviruses) have RNA as their genetic material. The biological information contained in an organism is encoded in its DNA or RNA sequence. RNA is also used for information transport (e.g., mRNA) and enzymatic functions (e.g., ribosomal RNA) in organisms that use DNA for the genetic code itself. Transfer RNA (tRNA) molecules are used to add specific amino acids during the process of protein translation.

Prokaryotic genetic material is organized in a simple circular DNA molecule (the bacterial chromosome) in the nucleoid region of the cytoplasm. Eukaryotic genetic material is divided into different, linear molecules called chromosomes inside a discrete nucleus, usually with additional genetic material in some organelles like mitochondria and chloroplasts (see endosymbiotic theory).

A human cell has genetic material in the nucleus (the nuclear genome) and in the mitochondria (the mitochondrial genome). In humans the nuclear genome is divided into 23 pairs of linear DNA molecules called chromosomes. The mitochondrial genome is a circular DNA molecule distinct from the nuclear DNA. Although the mitochondrial DNA is very small compared to nuclear chromosomes, it codes for 13 proteins involved in mitochondrial energy production as well as specific tRNAs.

Foreign genetic material (most commonly DNA) can also be artificially introduced into the cell by a process called transfection. This can be transient, if the DNA is not inserted into the cell's genome, or stable, if it is. Certain viruses also insert their genetic material into the genome.

Organelles

Main article: Organelle

The human body contains many different organs, such as the heart, lung, and kidney, with each organ performing a different function. Cells also have a set of "little organs," called organelles, that are adapted and/or specialized for carrying out one or more vital functions.

There are several types of organelles within an animal cell. Some (such as the nucleus and golgi apparatus) are typically solitary, while others (such as mitochondria, peroxisomes and lysosomes) can be numerous (hundreds to thousands). The cytosol is the gelatinous fluid that fills the cell and surrounds the organelles.

Mitochondria and Chloroplasts (the power generators)

Mitochondria are self-replicating organelles that occur in various numbers, shapes, and sizes in the cytoplasm of all eukaryotic cells. Mitochondria play a critical role in generating energy in the eukaryotic cell. Mitochondria generate the cell's energy by the process of oxidative phosphorylation, utilizing oxygen to release energy stored in cellular nutrients (typically pertaining to glucose) to generate ATP. Mitochondria multiply by splitting in two.

Organelles that are modified chloroplasts are broadly called plastids, and are involved in energy storage through the process of photosynthesis, which utilizes solar energy to generate carbohydrates and oxygen from carbon dioxide and water.

Mitochondria and chloroplasts each contain their own genome, which is separate and distinct from the nuclear genome of a cell. Both of these organelles contain this DNA in circular plasmids, much like prokaryotic cells, strongly supporting the evolutionary theory of endosymbiosis; since these organelles contain their own genomes and have other similarities to prokaryotes, they are thought to have developed through a symbiotic relationship after being engulfed by a primitive cell.

Ribosomes

The ribosome is a large complex of RNA and protein molecules. This is where proteins are produced. Ribosomes can be found either floating freely or bound to a membrane (the rough endoplasmatic reticulum in eukaryotes, or the cell membrane in prokaryotes).^[8]

Cell nucleus (a cell's information center) The cell nucleus is the most conspicuous organelle found in a eukaryotic cell. It houses the cell's chromosomes, and is the place where almost all DNA replication and RNA synthesis (transcription) occur. The nucleus is spherical in shape and separated from the cytoplasm by a double membrane called the nuclear envelope. The nuclear envelope isolates and protects a cell's DNA from various molecules that could accidentally damage its structure or interfere with its processing. During processing, DNA is transcribed, or copied into a special RNA, called mRNA. This mRNA is then transported out of the nucleus, where it is translated into a specific protein molecule. The nucleolus is a specialized region within the nucleus where ribosome subunits are assembled. In prokaryotes, DNA processing takes place in the cytoplasm.
Endoplasmic reticulum (eukaryotes only) The endoplasmic reticulum (ER) is the transport network for molecules targeted for certain modifications and specific destinations, as compared to molecules that will float freely in the cytoplasm. The ER has two forms: the rough ER, which has ribosomes on its surface and secretes proteins into the cytoplasm, and the smooth ER, which lacks them. Smooth ER plays a role in calcium sequestration and release.
Golgi apparatus (eukaryotes only) The primary function of the Golgi apparatus is to process and package the macromolecules such as proteins and lipids that are synthesized by the cell. It is particularly important in the processing of proteins for secretion. The Golgi apparatus forms a part of the endomembrane system of eukaryotic cells. Vesicles that enter the Golgi apparatus are processed in a cis to trans direction, meaning they coalesce on the cis side of the apparatus and after processing pinch off on the opposite (trans) side to form a new vesicle in the animal cell.
Lysosomes and Peroxisomes (eukaryotes only) Lysosomes contain digestive enzymes (acid hydrolases). They digest excess or worn-out organelles, food particles, and engulfed viruses or bacteria. Peroxisomes have enzymes that rid the cell of toxic peroxides. The cell could not house these destructive enzymes if they were not contained in a membrane-bound system. These organelles are often called a "suicide bag" because of their ability to detonate and destroy the cell.
Centrosome (the cytoskeleton organiser) The centrosome produces the microtubules of a cell - a key component of the cytoskeleton. It directs the transport through the ER and the Golgi apparatus. Centrosomes are composed of two centrioles, which separate during cell division and help in the formation of the mitotic spindle. A single centrosome is present in the animal cells. They are also found in some fungi and algae cells.
Vacuoles Vacuoles store food and waste. Some vacuoles store extra water. They are often described as liquid filled space and are surrounded by a membrane. Some cells, most notably Amoeba, have contractile vacuoles, which are able to pump water out of the cell if there is too much water.

Structures outside the cell wall

Capsule

It is present only in some bacteria outside the cell wall. It is gelatinous in nature. The capsule may be polysaccharide as in pneumococci, meningococci or polypeptide as bacillus anthracis or hyaluronic acid as in streptococci. Capsules not stained by ordinary stain and can detected by special stain. The capsule is antigenic. The capsule has antiphagocytic function so it determines the virulence of many bacteria. It also plays a role in attachment of the organism to mucous membranes.

Flagella

Flagella are the organelles of mobility. They arise from cytoplasm and extrude through the cell wall. They are long and thick thread like appendages, protein in nature, formed of flagellin protein (antigenic). They can not be stained by gram stain. They have a special stain. According to their arrangement they may be monotrichate, amphitrichate, lophotrichate, peritrichate.

Fimbriae (pili)

They are short and thin hair like filaments, formed of protein called pilin (antigenic). Fimbriae are responsible for attachment of bacteria to specific receptors of human cell (adherence). There are special types of pili called (sex pili) involved in the process of conjunction.

Cell functions

Cell growth and metabolism

Main articles: Cell growth and Metabolism

Between successive cell divisions, cells grow through the functioning of cellular metabolism.

Cell metabolism is the process by which individual cells process nutrient molecules. Metabolism has two distinct divisions: catabolism, in which the cell breaks down complex molecules to produce energy and reducing power, and anabolism, in which the cell uses energy and reducing power to construct complex molecules and perform other biological functions. Complex sugars consumed by the organism can be broken down into a less chemically-complex sugar molecule called glucose. Once inside the cell, glucose is broken down to make adenosine triphosphate (ATP), a form of energy, via two different pathways.

The first pathway, glycolysis, requires no oxygen and is referred to as anaerobic metabolism. Each reaction is designed to produce some hydrogen ions that can then be used to make energy packets (ATP). In prokaryotes, glycolysis is the only method used for converting energy.

The second pathway, called the Krebs cycle, or citric acid cycle, occurs inside the mitochondria and is capable of generating enough ATP to run all the cell functions.

An overview of protein synthesis.
Within the nucleus of the cell (light blue), genes (DNA, dark blue) are transcribed into RNA. This RNA is then subject to post-transcriptional modification and control, resulting in a mature mRNA (red) that is then transported out of the nucleus and into the cytoplasm (peach), where it undergoes translation into a protein. mRNA is translated by ribosomes (purple) that match the three-base codons of the mRNA to the three-base anti-codons of the appropriate tRNA. Newly-synthesized proteins (black) are often further modified, such as by binding to an effector molecule (orange), to become fully active.

Creation of new cells

Main article: Cell division

Cell division involves a single cell (called a mother cell) dividing into two daughter cells. This leads to growth in multicellular organisms (the growth of tissue) and to procreation (vegetative reproduction) in unicellular organisms.

Prokaryotic cells divide by binary fission. Eukaryotic cells usually undergo a process of nuclear division, called mitosis, followed by division of the cell, called cytokinesis. A diploid cell may also undergo meiosis to produce haploid cells, usually four. Haploid cells serve as gametes in multicellular organisms, fusing to form new diploid cells.

DNA replication, or the process of duplicating a cell's genome, is required every time a cell divides. Replication, like all cellular activities, requires specialized proteins for carrying out the job.

Protein synthesis

Main article: Protein biosynthesis

Cells are capable of synthesizing new proteins, which are essential for the modulation and maintenance of cellular activities. This process involves the formation of new protein molecules from amino acid building blocks based on information encoded in DNA/RNA. Protein synthesis generally consists of two major steps: transcription and translation.

Transcription is the process where genetic information in DNA is used to produce a complementary RNA strand. This RNA strand is then processed to give messenger RNA (mRNA), which is free to migrate through the cell. mRNA molecules bind to protein-RNA complexes called ribosomes located in the cytosol, where they are translated into polypeptide sequences. The ribosome mediates the formation of a polypeptide sequence based on the mRNA sequence. The mRNA sequence directly relates to the polypeptide sequence by binding to transfer RNA (tRNA) adapter molecules in binding pockets within the ribosome. The new polypeptide then folds into a functional three-dimensional protein molecule.

Cell movement or motility

Cells can move during many processes: such as wound healing, the immune response and cancer metastasis. For wound healing to occur, white blood cells and cells that ingest bacteria move to the wound site to kill the microorganisms that cause infection.
At the same time fibroblasts (connective tissue cells) move there to remodel damaged structures. In the case of tumor development, cells from a primary tumor move away and spread to other parts of the body. Cell motility involves many receptors, crosslinking, bundling, binding, adhesion, motor and other proteins.^[9] The process is divided into three steps - protrusion of the leading edge of the cell, adhesion of the leading edge and de-adhesion at the cell body and rear, and cytoskeletal contraction to pull the cell forward. Each of these steps is driven by physical forces generated by unique segments of the cytoskeleton.^[10][11]

Evolution

Main: Evolutionary history of life

The origin of cells has to do with the origin of life, which began the history of life on Earth.

Origin of the first cell

For further information, see Abiogenesis

There are three leading hypotheses for the source of small molecules that would make up life in an early Earth. One is that they came from meteorites (see Murchison meteorite). Another is that they were created at deep-sea vents. A third is that they were synthesized by lightning in a reducing atmosphere (see Miller–Urey experiment); although it is not sure Earth had such an atmosphere. There is essentially no experimental data to tell what the first self-replicate forms were. RNA is generally assumed to be the earliest self-replicating molecule, as it is capable of both storing genetic information and catalyze chemical reactions (see RNA world hypothesis). But some other entity with the potential to self-replicate could have preceded RNA, like clay or peptide nucleic acid.^[12]

Cells emerged at least 3.0–3.3 billion years ago. The current belief is that these cells were heterotrophs. An important characteristic of cells is the cell membrane, composed of a bilayer of lipids. The early cell membranes were probably more simple and permeable than modern ones, with only a single fatty acid chain per lipid. Lipids are known to spontaneously form bilayered vesicles in water, and could have preceded RNA. But the first cell membranes could also have been produced by catalytic RNA, or even have required structural proteins before they could form.^[13]

Origin of eukaryotic cells

The eukaryotic cell seems to have evolved from a symbiotic community of prokaryotic cells. It is almost certain that DNA-bearing organelles like the mitochondria and the chloroplasts are what remains of ancient symbiotic oxygen-breathing proteobacteria and cyanobacteria, respectively, where the rest of the cell seems to be derived from an ancestral archaean prokaryote cell – a theory termed the endosymbiotic theory.

There is still considerable debate about whether organelles like the hydrogenosome predated the origin of mitochondria, or viceversa: see the hydrogen hypothesis for the origin of eukaryotic cells.

Sex, as the stereotyped choreography of meiosis and syngamy that persists in nearly all extant eukaryotes, may have played a role in the transition from prokaryotes to eukaryotes. An 'origin of sex as vaccination' theory suggests that the eukaryote genome accreted from prokaryan parasite genomes in numerous rounds of lateral gene transfer. Sex-as-syngamy (fusion sex) arose when infected hosts began swapping nuclearized genomes containing co-evolved, vertically transmitted symbionts that conveyed protection against horizontal infection by more virulent symbionts.^[14]

COMPARISON BEETWEEN PROKARYOTES AND EUKARYOTES CELLS

Mouse cells grown in a culture dish. These cells grow in large clumps, but each individual cell is about 10 micrometres across

Each cell is at least somewhat self-contained and self-maintaining: it can take in nutrients, convert these nutrients into energy, carry out specialized functions, and reproduce as necessary. Each cell stores its own set of instructions for carrying out each of these activities.

Prokaryotic cells

Main article: Prokaryote

Diagram of a typical prokaryotic cell

The prokaryote cell is simpler than a eukaryote cell, lacking a nucleus and most of the other organelles of eukaryotes. There are two kinds of prokaryotes: bacteria and these share a similar overall structure.

A prokaryotic cell has three architectural regions:

• on the outside, flagella and pili project from the cell's surface. These are structures (not present in all prokaryotes) made of proteins that facilitate movement and communication between cells;
• enclosing the cell is the cell envelope - generally consisting of a cell wall covering a plasma membrane though some bacteria also have a further covering layer called a capsule. The envelope gives rigidity to the cell and separates the interior of the cell from its environment, serving as a protective filter. Though most prokaryotes have a cell wall, there are exceptions such as Mycoplasma (bacteria) and Thermoplasma (archaea)). The cell wall consists of peptidoglycan in bacteria, and acts as an additional barrier against exterior forces. It also prevents the cell from expanding and finally bursting (cytolysis) from osmotic pressure against a hypotonic environment. Some eukaryote cells (in plants and fungi) also have a cell wall;
• inside the cell is the cytoplasmic region that contains the cell genome (DNA) and ribosomes and various sorts of inclusions. A prokaryotic chromosome is usually a circular molecule (an exception is that of the bacterium Borrelia burgdorferi, which causes Lyme disease). Though not forming a nucleus, the DNA is condensed in a nucleoid. Prokaryotes can carry extrachromosomal DNA elements called plasmids, which are usually circular. Plasmids enable additional functions, such as antibiotic resistance.

Diagram of a typical animal (eukaryotic) cell, showing subcellular components.
Organelles:
(1) nucleolus
(2) nucleus
(3) ribosome
(4) vesicle
(5) rough endoplasmic reticulum (ER)
(6) Golgi apparatus
(7) Cytoskeleton
(8) smooth endoplasmic reticulum
(9) mitochondria
(10) vacuole
(11) cytoplasm
(12) lysosome
(13) centrioles within centrosome



COMPARISON BEETWEEN PROKARYOTES AND EUKARYOTES CELLS

	Prokaryotes	Eukaryotes
Typical organisms	bacteria, archaea	protists, fungi, plants, animals
Typical size	~ 1-10 µm	~ 10-100 µm (sperm cells, apart from the tail, are smaller)
Type of nucleus	nucleoid region; no real nucleus	real nucleus with double membrane
DNA	circular (usually)	linear molecules (chromosomes) with histone proteins
RNA-/protein-synthesis	coupled in cytoplasm	RNA-synthesis inside the nucleus protein synthesis in cytoplasm
Ribosomes	50S+30S	60S+40S
Cytoplasmatic structure	very few structures	highly structured by endomembranes and a cytoskeleton
Cell movement	flagella made of flagellin	flagella and cilia containing microtubules; lamellipodia and filopodia containing actin
Mitochondria	none	one to several thousand (though some lack mitochondria)
Chloroplasts	none	in algae and plants
Organization	usually single cells	single cells, colonies, higher multicellular organisms with specialized cells
Cell division	Binary fission (simple division)	Mitosis (fission or budding) Meiosis

Table 2: Comparison of structures between animal and plant cells

	Typical animal cell	Typical plant cell
Organelles	Nucleus Nucleolus (within nucleus) Rough endoplasmic reticulum (ER) Smooth ER Ribosomes Cytoskeleton Golgi apparatus Cytoplasm Mitochondria Vesicles Lysosomes Centrosome Centrioles Vacuoles	Nucleus Nucleolus (within nucleus) Rough ER Smooth ER Ribosomes Cytoskeleton Golgi apparatus (dictiosomes) Cytoplasm Mitochondria

epithelial cell

The cell

The cell is the structural and functional unit of all known living organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life.^[1] Some organisms, such as most bacteria, are unicellular (consist of a single cell). Other organisms, such as humans, are multicellular. (Humans have an estimated 100 trillion or 10¹⁴ cells; a typical cell size is 10 µm; a typical cell mass is 1 nanogram.) The largest known cell is an unfertilized ostrich egg cell.^[2]

In 1835 before the final cell theory was developed, a Czech Jan Evangelista Purkyně observed small "granules" while looking at the plant tissue through a microscope. The cell theory, first developed in 1839 by Matthias Jakob Schleiden and Theodor Schwann, states that all organisms are composed of one or more cells. All cells come from preexisting cells. Vital functions of an organism occur within cells, and all cells contain the hereditary information necessary for regulating cell functions and for transmitting information to the next generation of cells.^[3]

The word cell comes from the Latin cellula, meaning, a small room. The descriptive name for the smallest living biological structure was chosen by Robert Hooke in a book he published in 1665 when he compared the cork cells he saw through his microscope to the small rooms monks lived in.^[4]